PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004515611.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 90aa MW: 10633 Da PI: 7.5455

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004515611.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.5e-06	15	57	14	55
HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++iN+ ++L+ llP+ + + ++ s + iL+++ ++I+ Lq XP_004515611.1 15 KQINELVSRLQLLLPQlNNQRNNSMQSASKILQETLNHIRRLQ 57 58************54455555599*************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.94E-7	15	73	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-7	16	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 90 aa Download sequence Send to blast
MSGQRSSRDS KFSEKQINEL VSRLQLLLPQ LNNQRNNSMQ SASKILQETL NHIRRLQKEV 60 EEISEKLTQL MDSVDINDID RRTLENFLQY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004515611.1	1e-57	PREDICTED: transcription factor PRE6-like
TrEMBL	A0A0B2PI03	2e-38	A0A0B2PI03_GLYSO; Transcription factor bHLH135
TrEMBL	K7LAU2	2e-38	K7LAU2_SOYBN; Uncharacterized protein
STRING	GLYMA08G47171.1	5e-38	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10624	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28857.1	3e-12	bHLH family protein